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DotKnot uses pseudoknot loop entropy parameters published by Song Cao and Shi-Jie Chen in 2006. Sequences and structures used for evaluation in the papers. Is a heuristic method for pseudoknot prediction. In a given RNA sequence. DotKnot extracts stem regions from the secondary structure probability dot plot.
Practical RNA folding including simple recursive pseudoknots. Exact matching under RNA base pairing rules. Toolbox for prediction and comparison of RNA secondary structures. Jana Sperschneider and Amitava Datta. The maximum sequence length limit is set to 1000 bases.
California State University San Marcos.
The web site of the U900 has been relocated. General description and information about U900. The activities of the computational systems biology of cancer group in U900.
Ziele des Bioinformation Systems e. Wie können sie die Arbeit des Vereins unterstützen? The Bioinformation Systems e. -Team - Feel free to mail.