dotknot.csse uwa.edu.au

DotKnot Submission - Input Form

Input and Output Format. Code DotKnot 1.3.2.tar.gz. DotKnot uses pseudoknot loop entropy parameters published by Song Cao and Shi-Jie Chen in 2006. Sequences and structures used for evaluation in the papers. For comments, suggestions and reporting bugs please contact janaspeatcsse.uwa.edu.au. DotKnot pseudoknot prediction including kissing hairpins. Is a heuristic method for pseudoknot prediction. In a given RNA sequence. DotKnot extracts stem regions from the secondary structure probability dot plot.
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Bioinformatics at UWA

Biology easily has 500 years of exciting problems to work on. School of Computer Science and Software Engineering. Bioinformatics is broadly defined as the application of computers for solving information problems in the life sciences. Bioinformatics is commonly associated with the creation and maintenance of databases for the vast amount of information coming from laboratories, for example nucleic acid and protein sequence data.

KnotSeeker Submission - Input Form

Practical RNA folding including simple recursive pseudoknots. Exact matching under RNA base pairing rules. Toolbox for prediction and comparison of RNA secondary structures. Jana Sperschneider and Amitava Datta. The maximum sequence length limit is set to 1000 bases.

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DOTKNOT.CSSE.UWA.EDU.AU HOST

We detected that a single root page on dotknot.csse.uwa.edu.au took nine hundred and ninety-nine milliseconds to load. We could not detect a SSL certificate, so we consider dotknot.csse.uwa.edu.au not secure.
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130.95.172.98

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DotKnot Submission - Input Form

DESCRIPTION

Input and Output Format. Code DotKnot 1.3.2.tar.gz. DotKnot uses pseudoknot loop entropy parameters published by Song Cao and Shi-Jie Chen in 2006. Sequences and structures used for evaluation in the papers. For comments, suggestions and reporting bugs please contact janaspeatcsse.uwa.edu.au. DotKnot pseudoknot prediction including kissing hairpins. Is a heuristic method for pseudoknot prediction. In a given RNA sequence. DotKnot extracts stem regions from the secondary structure probability dot plot.

CONTENT

This domain dotknot.csse.uwa.edu.au states the following, "DotKnot uses pseudoknot loop entropy parameters published by Song Cao and Shi-Jie Chen in 2006." We observed that the website also stated " Sequences and structures used for evaluation in the papers." It also stated " For comments, suggestions and reporting bugs please contact janaspeatcsse. DotKnot pseudoknot prediction including kissing hairpins. Is a heuristic method for pseudoknot prediction. In a given RNA sequence. DotKnot extracts stem regions from the secondary structure probability dot plot."

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